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1

Forty years of research on the assembly and infection process of bacteriophage

Journal:

Biophysical Reviews

Year:

2018

Language:

english

File:

PDF, 175 KB

english, 2018

2

Sequential Assembly of the Wedge of the Baseplate of Phage T4 in the Presence and Absence of Gp11 as Monitored by Analytical Ultracentrifugation

Moh Lan Yap, Kazuhiro Mio, Said Ali, Allen Minton, Shuji Kanamaru, Fumio Arisaka

Journal:

Macromolecular Bioscience

Year:

2010

Language:

english

File:

PDF, 418 KB

english, 2010

3

Structure of the cell-puncturing device of bacteriophage T4

Kanamaru, Shuji, Leiman, Petr G., Kostyuchenko, Victor A., Chipman, Paul R., Mesyanzhinov, Vadim V., Arisaka, Fumio, Rossmann, Michael G.

Journal:

Year:

2002

Language:

english

File:

PDF, 453 KB

english, 2002

4

Three-dimensional structure of bacteriophage T4 baseplate

van Raaij, Mark J, Arisaka, Fumio, Mesyanzhinov, Vadim V, Rossmann, Michael G, Kostyuchenko, Victor A, Leiman, Petr G, Chipman, Paul R, Kanamaru, Shuji

Journal:

Natural Structural Biology

Year:

2003

Language:

english

File:

PDF, 1.06 MB

english, 2003

5

Dimer–tetramer association equilibria of human adult hemoglobin and its mutants as observed by analytical ultracentrifugation

Fumio Arisaka, Yukifumi Nagai, Masako Nagai

Journal:

Year:

2011

Language:

english

File:

PDF, 948 KB

english, 2011

6

Analytical Ultracentrifugation || Fluorescence Detection System

Uchiyama, Susumu, Arisaka, Fumio, Stafford, Walter F., Laue, Tom

Year:

2016

Language:

english

File:

PDF, 927 KB

english, 2016

7

Analytical Ultracentrifugation || Introduction: Calculation of Hydrodynamic Parameters

Uchiyama, Susumu, Arisaka, Fumio, Stafford, Walter F., Laue, Tom

Year:

2016

Language:

english

File:

PDF, 273 KB

english, 2016

8

Analytical Ultracentrifugation || Biopharmaceutical Evaluation of Intermolecular Interactions by AUC-SE

Uchiyama, Susumu, Arisaka, Fumio, Stafford, Walter F., Laue, Tom

Year:

2016

Language:

english

File:

PDF, 583 KB

english, 2016

9

Analytical Ultracentrifugation ||

Uchiyama, Susumu, Arisaka, Fumio, Stafford, Walter F., Laue, Tom

Year:

2016

Language:

english

File:

PDF, 14.88 MB

english, 2016

10

Analytical Ultracentrifugation || Protein-Ligand Interactions

Uchiyama, Susumu, Arisaka, Fumio, Stafford, Walter F., Laue, Tom

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

11

Analytical Ultracentrifugation || The HYDRO Software Suite for the Prediction of Solution Properties of Rigid and Flexible Macromolecules and Nanoparticles

Uchiyama, Susumu, Arisaka, Fumio, Stafford, Walter F., Laue, Tom

Year:

2016

Language:

english

File:

PDF, 928 KB

english, 2016

12

Analytical Ultracentrifugation || The Multiwavelength UV/Vis Detector: New Possibilities with an Added Spectral Dimension

Uchiyama, Susumu, Arisaka, Fumio, Stafford, Walter F., Laue, Tom

Year:

2016

Language:

english

File:

PDF, 999 KB

english, 2016

13

1D1815 Structural analysis of the connector complex, P15, of bacteriophage T4 by analytical ultracentrifugation and electron microscopy

Zhao, Li, Chaidirek, Chartree'chalerm, Takeda, Yoko, Kanamaru, Shuji, Arisaka, Fumio

Journal:

Seibutsu Butsuri

Year:

2000

File:

PDF, 248 KB

2000

14

Construction of a Ball-and-Spike Protein Supramolecule

Kenji Sugimoto, Shuji Kanamaru, Kenji Iwasaki, Fumio Arisaka, Ichiro Yamashita

Journal:

Angewandte Chemie

Year:

2006

Language:

english

File:

PDF, 402 KB

english, 2006

15

Bionanotube Tetrapod Assembly by In Situ Synthesis of a Gold Nanocluster with (Gp5–His6)3 from Bacteriophage T4

Takafumi Ueno, Tomomi Koshiyama, Toshimitsu Tsuruga, Toshiaki Goto, Shuji Kanamaru, Fumio Arisaka, Yoshihito Watanabe

Journal:

Angewandte Chemie

Year:

2006

Language:

english

File:

PDF, 527 KB

english, 2006

16

Construction of a Ball-and-Spike Protein Supramolecule

Kenji Sugimoto, Shuji Kanamaru, Kenji Iwasaki, Fumio Arisaka, Ichiro Yamashita

Journal:

Angewandte Chemie International Edition

Year:

2006

Language:

english

File:

PDF, 403 KB

english, 2006

17

Bionanotube Tetrapod Assembly by In Situ Synthesis of a Gold Nanocluster with (Gp5–His6)3 from Bacteriophage T4

Takafumi Ueno, Tomomi Koshiyama, Toshimitsu Tsuruga, Toshiaki Goto, Shuji Kanamaru, Fumio Arisaka, Yoshihito Watanabe

Journal:

Angewandte Chemie International Edition

Year:

2006

Language:

english

File:

PDF, 528 KB

english, 2006

18

Biochemical analysis and kinetic modeling of the thermal inactivation of MBP-fused heparinase I: Implications for a comprehensive thermostabilization strategy

Shuo Chen, Fengchun Ye, Yang Chen, Yu Chen, Hongxin Zhao, Rie Yatsunami, Satoshi Nakamura, Fumio Arisaka, Xin-Hui Xing

Journal:

Biotechnology and Bioengineering

Year:

2011

Language:

english

File:

PDF, 8.16 MB

english, 2011

19

The neck of bacteriophage T4 is a ring-like structure formed by a hetero-oligomer of gp13 and gp14

Tahmina Akhter, Li Zhao, Atsushi Kohda, Kazuhiro Mio, Shuji Kanamaru, Fumio Arisaka

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2007

Language:

english

File:

PDF, 1.29 MB

english, 2007

20

Mapping of functional sites on the primary structure of the contractile tail sheath protein of bacteriophage T4 by mutation analysis

Shigeki Takeda, Makoto Suzuki, Takahito Yamada, Manabu Kageyama, Fumio Arisaka

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2004

Language:

english

File:

PDF, 2.32 MB

english, 2004

21

Association and dissociation of the cell puncturing complex of bacteriophage T4 is controlled by both pH and temperature

Subodh Kumar Sarkar, Yoko Takeda, Shuji Kanamaru, Fumio Arisaka

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2006

Language:

english

File:

PDF, 350 KB

english, 2006

22

Detection of structural changes in a cofactor binding protein by using a wheat germ cell-free protein synthesis system coupled with unnatural amino acid probing

Masato Abe, Satoshi Ohno, Takashi Yokogawa, Takeshi Nakanishi, Fumio Arisaka, Takamitsu Hosoya, Toshiyuki Hiramatsu, Masaaki Suzuki, Tomio Ogasawara, Tatsuya Sawasaki, Kazuya Nishikawa, Masaya Kitamur

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 340 KB

english, 2007

23

A novel method for selective isolation of C-terminal peptides from tryptic digests of proteins by immobilized anhydrotrypsin: Application to structural analyses of the tail sheath and tube proteins from bacteriophage T4

Takashi Kumazaki, Tatsushi Nakako, Fumio Arisaka, Shin-Ichi Ishii

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1986

Language:

english

File:

PDF, 760 KB

english, 1986

24

Activity-dependent neurotrophic factor, ADNF, determines the structure characteristics of Colivelin, a fusion protein of ADNF9 and Humanin analog

Tsutomu Arakawa, Takako Niikura, Fumio Arisaka, Yoshiko Kita

Journal:

Journal of Peptide Science

Year:

2008

Language:

english

File:

PDF, 225 KB

english, 2008

25

Molecular Design of Heteroprotein Assemblies Providing a Bionanocup as a Chemical Reactor

Tomomi Koshiyama, Norihiko Yokoi, Takafumi Ueno, Shuji Kanamaru, Shingo Nagano, Yoshitsugu Shiro, Fumio Arisaka, Yoshihito Watanabe

Journal:

Year:

2008

Language:

english

File:

PDF, 569 KB

english, 2008

26

Construction of Robust Bio-nanotubes using the Controlled Self-Assembly of Component Proteins of Bacteriophage T4

Norihiko Yokoi, Hiroshi Inaba, Makoto Terauchi, Adam Z. Stieg, Nusrat J. M. Sanghamitra, Tomomi Koshiyama, Katsuhide Yutani, Shuji Kanamaru, Fumio Arisaka, Tatsuo Hikage, Atsuo Suzuki, Takashi Yamane,

Journal:

Year:

2010

Language:

english

File:

PDF, 833 KB

english, 2010

27

Protein engineering: Construction of Robust Bio-nanotubes using the Controlled Self-Assembly of Component Proteins of Bacteriophage T4 (Small 17/2010)

Norihiko Yokoi, Hiroshi Inaba, Makoto Terauchi, Adam Z. Stieg, Nusrat J. M. Sanghamitra, Tomomi Koshiyama, Katsuhide Yutani, Shuji Kanamaru, Fumio Arisaka, Tatsuo Hikage, Atsuo Suzuki, Takashi Yamane,

Journal:

Year:

2010

File:

PDF, 1.73 MB

2010

28

Structure and function of hemocyanin from thalassinid shrimp

Karen I. Miller, Neal W. Eldred, Fumio Arisaka, K. E. Holde

Journal:

Journal of Comparative Physiology A: Neuroethology, Sensory, Neural, and Behavioral Physiology

Year:

1977

Language:

english

File:

PDF, 860 KB

english, 1977

29

Structure Analysis of Activity-dependent Neurotrophic Factor 9 by Circular Dichroism and Sedimentation Equilibrium

Tsutomu Arakawa, Takako Niikura, Hirohisa Tajima, Fumio Arisaka, Yoshiko Kita

Journal:

Journal of Molecular Neuroscience

Year:

2007

Language:

english

File:

PDF, 181 KB

english, 2007

30

The tail structure of bacteriophage T4 and its mechanism of contraction

Kostyuchenko, Victor A, Chipman, Paul R, Leiman, Petr G, Arisaka, Fumio, Mesyanzhinov, Vadim V, Rossmann, Michael G

Journal:

Nature Structural and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 489 KB

english, 2005

31

Assembly and infection process of bacteriophage T4

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

2005

Language:

english

File:

PDF, 1.20 MB

english, 2005

32

Primary structure of the tail sheath protein of bacteriophage T4 and its gene

Fumio Arisaka, Tatsushi Nakako, Takashi Kumazaki, Shin-ichi Ishii

Journal:

The Protein Journal

Year:

1987

Language:

english

File:

PDF, 375 KB

english, 1987

33

Kinetic analysis of the polymerization process of actin

Fumio Arisaka, Haruhiko Noda, Koscak Maruyama

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure

Year:

1975

Language:

english

File:

PDF, 530 KB

english, 1975

34

Synthesis of α-helix-forming peptides by gene engineering methods and their characterization by circular dichroism spectra measurements

Shuichi Kojima, Yukino Kuriki, Yoshihiro Sato, Fumio Arisaka, Izumi Kumagai, Sho Takahashi, Kin-ichiro Miura

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1996

Language:

english

File:

PDF, 796 KB

english, 1996

35

Residue 134 determines the dimer–tetramer assembly of nucleoside diphosphate kinase from moderately halophilic bacteria

Hiroko Tokunaga, Matsujiro Ishibashi, Fumio Arisaka, Shigeki Arai, Ryota Kuroki, Tsutomu Arakawa, Masao Tokunaga

Journal:

Year:

2008

Language:

english

File:

PDF, 779 KB

english, 2008

36

Solution structure of the N-terminal domain of the archaeal D-family DNA polymerase small subunit reveals evolutionary relationship to eukaryotic B-family polymerases

Kazuhiko Yamasaki, Yuji Urushibata, Tomoko Yamasaki, Fumio Arisaka, Ikuo Matsui

Journal:

Year:

2010

Language:

english

File:

PDF, 722 KB

english, 2010

37

The C-terminal coiled-coil of the bacterial voltage-gated sodium channel NaChBac is not essential for tetramer formation, but stabilizes subunit-to-subunit interactions

Kazuhiro Mio, Muneyo Mio, Fumio Arisaka, Masahiko Sato, Chikara Sato

Journal:

Progress in Biophysics and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.58 MB

english, 2010

38

The bacteriophage T4 DNA injection machine

Michael G Rossmann, Vadim V Mesyanzhinov, Fumio Arisaka, Petr G Leiman

Journal:

Current Opinion in Structural Biology

Year:

2004

Language:

english

File:

PDF, 1.09 MB

english, 2004

39

Discovery of the tail tube gene of bacteriophage Mu and sequence analysis of the sheath and tube genes

Shigeki Takeda, Takayo Sasaki, Akishige Ritani, Martha M. Howe, Fumio Arisaka

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression

Year:

1998

Language:

english

File:

PDF, 503 KB

english, 1998

40

Stoichiometry and inter-subunit interaction of the wedge initiation complex, gp10-gp11, of bacteriophage T4

Li Zhao, Shigeki Takeda, Petr G. Leiman, Fumio Arisaka

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

2000

Language:

english

File:

PDF, 302 KB

english, 2000

41

Mapping of functional sites on the primary structure of the tail lysozyme of bacteriophage T4 by mutational analysis

Shigeki Takeda, Kotaro Hoshida, Fumio Arisaka

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1998

Language:

english

File:

PDF, 183 KB

english, 1998

42

Chimeric Virus-like Particle Formation of Adeno-Associated Virus

Mainul Hoque, Noriaki Shimizu, Ken-ichiro Ishizu, Hiroaki Yajima, Fumio Arisaka, Kenji Suzuki, Hajime Watanabe, Hiroshi Handa

Journal:

Biochemical and Biophysical Research Communications

Year:

1999

Language:

english

File:

PDF, 199 KB

english, 1999

43

Circular dichroism spectra show abundance of β-sheet structure in connectin, a muscle elastic protein

Koscak Maruyama, Yoshiharu Itoh, Fumio Arisaka

Journal:

Year:

1986

Language:

english

File:

PDF, 252 KB

english, 1986

44

Atomic force microscope of bacteriophage T4 and its tube-baseplate complex

Atsushi Ikai, Kousei Yoshimura, Fumio Arisaka, Akishige Ritani, Kensaku Imai

Journal:

Year:

1993

Language:

english

File:

PDF, 256 KB

english, 1993

45

Purification and characterization of virus-like particles and pentamers produced by the expression of SV40 capsid proteins in insect cells

Akinobu Kosukegawa, Fumio Arisaka, Makoto Takayama, Hiroaki Yajima, Akihiro Kaidow, Hiroshi Handa

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

1996

Language:

english

File:

PDF, 1.24 MB

english, 1996

46

Stalk region of kinesin-related protein Unc104 has moderate ability to form coiled-coil dimer

Youské Shimizu, Hisayuki Morii, Fumio Arisaka, Masaru Tanokura

Journal:

Biochemical and Biophysical Research Communications

Year:

2005

Language:

english

File:

PDF, 493 KB

english, 2005

47

AAA+ Ring and Linker Swing Mechanism in the Dynein Motor

Anthony J. Roberts, Naoki Numata, Matt L. Walker, Yusuke S. Kato, Bara Malkova, Takahide Kon, Reiko Ohkura, Fumio Arisaka, Peter J. Knight, Kazuo Sutoh, Stan A. Burgess

Journal:

Year:

2009

Language:

english

File:

PDF, 1.11 MB

english, 2009

48

The structure analysis of Humanin analog, AGA-(C8R)HNG17, by circular dichroism and sedimentation equilibrium: Comparison with the parent molecule

Fumio Arisaka, Takako Niikura, Tsutomu Arakawa, Yoshiko Kita

Journal:

International Journal of Biological Macromolecules

Year:

2008

Language:

english

File:

PDF, 606 KB

english, 2008

49

Short neuroprotective peptides, ADNF9 and NAP, are structurally disordered and monomeric in PBS

Tsutomu Arakawa, Takako Niikura, Fumio Arisaka, Yoshiko Kita

Journal:

International Journal of Biological Macromolecules

Year:

2009

Language:

english

File:

PDF, 398 KB

english, 2009

50

Indolepyruvate ferredoxin oxidoreductase: An oxygen-sensitive iron–sulfur enzyme from the hyperthermophilic archaeon Thermococcus profundus

Yukiko Ozawa, Masood Ahmed Siddiqui, Yasufumi Takahashi, Akio Urushiyama, Daijiro Ohmori, Fumiyuki Yamakura, Fumio Arisaka, Takeo Imai

Journal:

Journal of Bioscience and Bioengineering

Year:

2012

Language:

english

File:

PDF, 419 KB

english, 2012